Thanks @Floraluk2 - I have been searching information to try to strengthen the root system and see if that would help them. I haven't been able to fertilize them due to their overly wet condition but I think maybe that would help them. I have been growing them since February inside and it would sad to loose all my work. Thanks again!!!

you could use sea weed or high potassium fertilizer to strengthen roots but any application will involve watering, which would simply exacerbate the problem. I would put them in a sunny place (that cannot be rained upon) and wait for them to dry out. Warmer weather will be good for them. If they seem overly wet, you can put them on paper towel or newspaper to soak out some of the excess water. A fan would help too. I do agree with floral that they will do fine, no need to stress or fuss too much.

If you can keep some sort of canopy going, to stop further rain from saturating the soil, your plants will be fine. I have seen much, much worse specimens, some of the most woeful being my own.

Take them out of the tray so they can drain properly. The pots do have drain holes, don't they?

@floraluk2 - oh yes!! I would never plant without a drain, if fact I may overdue the drainage on many of my containers. I have them in the tray to move easily and have taken them out of the foil pan to dry in the sun and breeze. They seem to be struggling along. We got another downpour last night and they are tucked in under our garage overhang. No sun again today. I will keep my fingers crossed but some look so sad. They will not get a drop of rain water again until they are dry. I love geraniums and they are quite expensive here for them so I have been trying to grow them from seed. I did get some others to bloom in the house in April.

Thanks all! I will update if they survive the Chicago weather.