Yes, vinegar will eventually just work its way through the compost / food chain like just about everything else. At diluted levels like in a bin or washed through, it won't have much of any effect at all. Note, vinegar is created by a bacteria that consumes/transforms ethanol or sugars, so it can occur naturally in a pile in certain conditions anyway - like breaking down liquids that also have sugars in them. Nothing to worry about, even if the smell is pretty strong to us (the smell itself is also some of it off-gassing / evaporating).