Don't know what kind of juicer you have, and the seeds won't hurt any quality juicer, but remember to get all the skins off as they are terribly bitter.
The seeds are also bitter but my juice tasted good.
Remember also that your juice from pomegranates does not seem to last as long as other juices in the fridge. If I were buying a case of pomegranates [and I have no idea how many that is where you live], you may be better off juicing just a half case at a time. The fruit keeps much better in the peel than the juice does in a jug in the refrigerator.
Hope this helps a little.
Jim in So Calif

Hi Jim!

Thanks for the feedback. I have a very high quality juicer (I can't remember the name of it right now, drawing a blank) so it shouldn't be a problem then. It's a 22lb box of pomegranates that I'm splitting with a friend so I will have 11lbs of poms to do with as I please! I'm very excited. Do you have any other ideas? Can you can pomegranate juice?